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四川省结核分枝杆菌基因分型中MIRU-VNTR位点稳定性评价

Evaluation of the stability and conservation of MIRU-VNTR loci of Mycobacterium tuberculosis in Sichuan

作者:罗槑()

Author:罗槑()

收稿日期:2015-01-28          年卷(期)页码:2015,52(5):-

期刊名称:四川大学学报: 自然科学版

Journal Name:Journal of Sichuan University (Natural Science Edition)

关键字:结核分枝杆菌;数目可变串联重复序列多态性;可变数目串联重复国际类型;四川地区

Key words:Mycobacterium tuberculosis; MIRU-VNTR; MIT; Sichuan

基金项目:其它

中文摘要

摘要: 本文收集四川省2009-2013年184株结核分枝杆菌菌株,用标准12 MIRU-VNTR位点组对四川省结核分枝杆菌菌株进行基因分型研究,评估四川地区一线VNTR分型位点的稳定性,确定四川地区保守位点组合及主要MIT型。184株结核分枝杆菌基因分型后得到51个基因型,12个基因型成簇。本研究确定当前四川地区12高分辨力位点VNTR分型方法中的7个MIRU位点依然具有较高的分辩能力(h > 0.55)。MIRU02, MIRU20, MIRU23, MIRU24为多态性最低的4个位点(0 ≤ h

英文摘要

Abstract: The standard 12-locus mycobacterial interspersed repetitive units-variable number tandem repeats (MIRU-VNTR) was performed on 184 M. tuberculosis clinic isolates that were randomly selected from the collection during 2009-2013 in Sichuan to evaluate the stability of the set of the first-line typing loci used in this region and detect the set of conservative loci and the predominant MIT. The study showed that 184 isolates were divided into 51 genotypes and 12 clusters, and confirmed that the 7 MIRU loci that were included in the adjusted scheme of the 12 highly discriminatory VNTR loci were effective (h > 0.55) and the 4 poorest discriminative loci were MIRU02, MIRU20, MIRU23, and MIRU24 (0 ≤ h

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